Bolstad, B. M., Irizarry R. A., Astrand, M, and Speed, T. P. (2003)especially cited unpublished manuscript
A Comparison of Normalization Methods for High Density Oligonucleotide Array Data Based on Bias and Variance.
Bioinformatics 19,2,pp 185-193
Bolstad, B (2001) Probe Level Quantile Normalization for High Density Oligonucleotide Array Data
library(SVA)In case of error messages, install SVA.
source("http://bioconductor.org/biocLite.R") biocLite("sva")and try again to load SVA.
library("DESEQ2")In case of error messages, install DESEQ2.
source("http://bioconductor.org/biocLite.R") biocLite("DESeq2")and try again to load DESEQ2.
library("DESeq2")In case of error messages, install DESEQ2.
source("http://bioconductor.org/biocLite.R") biocLite("DESeq2")and try again to load DESeq2.
c_{v} = ( 1 + 1/4n ) * s / m | |
with: s=sample standard deviation, m=sample mean, n=sample size more details |
CQD = ( Q3 - Q1 ) / (Q3 + Q1 ) | |
with: Q1=value of first quartiles, value of (n+1)/4th item Q3=value of third quartile: value of (3*(n+1))/4th item more details |