Heat maps visualising intensities / ratios of the expression matrix. The famous redgreen heat maps 

Box plots summarizing global intensity/ratio distribution in all hybridisations 

Scatter plots Analyze pair wise signal distributions See more details about the scatterplot viewer. of hybridisations 

Scatter plots mosaic Get an overview of signal distributions in all your sample data 

Histograms Show signal distribution in any or all loaded samples 

Line graphs / Profiles Illustrating e.g. gene/sample data profiles 

Correlation maps Illustrating intersample similarity 

Population maps 

Dot charts  
Deviation plot 

RLE plot 
XY  Signals from selected hybridisations are displayed 
R / I  Ratio from selected hybs on Yaxes, Product of
hybridisations on Xaxes 
Q / Q  Ranked (=intesity sorted) signals from selected
hybridisations are displayed See more details about the Scatterplot viewer 
3D  Signals from up to six selected hybridisations may be
displayed in a 3D scatterplot 
Deviation plot  Media normalized deviation plot 

"V"Samples  "IBC"Samples 
